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Staff Profile

Professor Christopher Stewart

Professor of Human Microbiome Research

  • Email: christopher.stewart@ncl.ac.uk
  • Telephone: 01912828578
  • Address: Translational and Clinical Research Institute
    Faculty of Medical Sciences
    Â鶹´«Ã½
    3rd Floor Leech Building, M3.089, Â鶹´«Ã½, NE2 4HH
Background

Professor Christopher Stewart is generously supported by the William Leech Charity


Background

I am currently funded on a Wellcome Trust / Royal Society Sir Henry Dale Fellowship & a 2021 Lister Institute Prize Fellowship, working within the Faculty of Medical Sciences. I previously worked at Baylor College of Medicine (Houston, Texas) and Northumbria University (Â鶹´«Ã½, UK).


My research interests are focused on the microbiome and host responses in human health and disease. My research typically focuses on early life (neonatal through to childhood) and is split into two major areas, 1) Multi-omic investigation of clinical samples and 2) Novel models to elucidate microbial-host crosstalk and interrogate the mechanisms of gastrointestinal disease. 


More information regarding my groups research is available on the “Research” tab. My publications are listed in the “Publications” tab and also on my Google Scholar profile (link below).


My group is currently recruiting PhD students, technicians, and Post-Doctoral Research Associates, please get in touch if you are interested.


Google Scholar: 

Twitter: 

Â鶹´«Ã½ Neonatal Nutrition and NEC Research (N4): 

 

 

Education and Training

2021 Lister Institute Prize Fellow - Â鶹´«Ã½, UK

Wellcome Trust / Royal Society Sir Henry Dale Fellow - Â鶹´«Ã½, UK

Â鶹´«Ã½ Academic Track (NUAcT) Fellow - Â鶹´«Ã½, UK

Marie Curie Research Fellow - Â鶹´«Ã½, UK

Faculty Fellow - Â鶹´«Ã½, UK

Post-Doctoral Associate - Baylor College of Medicine, USA

Research Fellow - University of Northumbria, UK

Ph.D. in Molecular Microbial Ecology - University of Northumbria, UK

BSc. Biotechnology: 1st Class Honors - University of Northumbria, UK


Awards and Honors

2025    Blavatnik Awards for Young Scientists in the UK - Laureate for Life Science

2024    Neonatal Society Rising Star Award

2023    Applied Microbiology International WH Pierce Prize

2023    NOSTER & Science Microbiome Prize Finalist

2023    Elected to the Royal Society UK Young Academy

2022    Microbiology Society Fleming Prize

2021    Lister Research Institute Prize

2020    Most Valuable Presentation (MVP) of the 2019 International Milk Genomics Consortium Symposium

2017    Kelly K. Woodard Award for outstanding achievements in scientific scholarship, research, and leadership

2016    Best oral presentation at Baylor College of Medicine departmental retreat

2015    Microbiome Award: worldwide competition for the best early career researchers in microbiome

Research

My research interests are focused on the ecology of microbial communities and host responses in human health and disease. My research typically focuses on early life (neonatal through to childhood) and is split into two major areas:

1) Multi-omic investigation of clinical samples: Applying high-throughput next generation sequencing and mass spectrometry-based approaches to generate comprehensive data from clinical samples, such as stool, nasopharyngeal aspirate, saliva, oral swabs, tissue resections, and blood. Such datasets typically include information relating to the presence of microbes and their genetic capacity, as well as microbial and host protein and metabolite levels. Bioinformatics and statistical analysis can then be applied to determine differences between diseased and control groups, plus what specific microbes/genes/proteins/metabolites are associated with each group. Although disease mechanism requires further work, this area of discovery research typically yields several testable hypotheses.

2) Novel models to elucidate microbial-host crosstalk and interrogate the mechanisms of gastrointestinal disease: The potential to interrogate microbial-host cross-talk promises to lead to major advances in our understanding of how microbes promote health or cause disease. Due to recent scientific advances, we now have the ability to take patient tissue that would otherwise be discarded and derive intestinal ‘enteroids’ from the tissue. These human intestinal enteroids are able to grow into ‘mini guts’ in the laboratory and can differentiate into all the major cell types of the intestine. They also secrete mucin and respond to viral or bacterial infection. Because the tissue is derived from patients with disease, and retains the genetic, epigenetic, and exposure history, human intestinal enteroids have several major advances over animal models. With collaborators at Baylor College of Medicine (Houston, USA), we have pioneered a powerful co-culture system that mimics the conditions of the gastrointestinal tract and simultaneously allows bacteria and patient-derived enteroids to interact directly. We can then test how the addition of specific bacteria influences the health or disease status of the cells, such as by measuring epithelial integrity, bacterial translocation, and markers of disease (e.g., inflammatory cytokines). This work allows microbial-host cross-talk to be investigated and can lead to mechanistic understanding of disease processes, which can be directly translated into the clinical care of patients.

Such knowledge from basic science has great potential for the development of new treatments and the clinical management of patients.

Teaching

Undergraduate and Masters

 

I currently lecture on the following modules:

Physiology of the GI Tract (BSc)

Research in Physiological Sciences (BSc)

Microbial Genomics (MSc)

 

I regularly supervise BSc, MSci., MSc, and MRes research projects.  My lab has also hosted undergraduate summer studentships.

 

 

Ph.D. and Postdoctoral project supervision

 

I have supervised numerous PhD students to completion. I have also provided mentorship to several Ph.D. students and Postdoctoral researchers.

 

Publications

  • Articles

    • Young GR, Noor NN, Khirwadkar A, Beck LC, Sharip MT, Whelan K, Kennedy N, Satsangi J, Marchesi JR, Jostins-Dean L, Stewart CJ, Lyons PA, Parkes M, Lamb CA. . Gut 2026, 75(3), 670-673.
    • Chapman JA, Masi AC, Beck LC, Watson H, Young GR, Browne HP, Shao Y, Kiu R, Nelson A, Doyle JA, Palmowski P, Lengyel M, Connolly JPR, Lamb CA, Porter A, Lawley TD, Hall LJ, Embleton ND, Perry JD, Berrington JE, Stewart CJ. . Nature Microbiology 2026, Epub ahead of print.
    • Lowe J, Gillespie D, Aboklaish A, Lau TMM, Consoli C, Babu M, Goddard M, Hood K, Klein N, Thomas-Jones E, Ahearn-Ford S, Young G, Stewart C, Turner M, Hubbard M, Marchesi J, Berrington J, Kotecha S. . Health Technology Assessment 2026, 30(12).
    • Dehghanizai AB, Stewart CJ, Thomas RH. . Practical Neurology 2025, 25(6), 527-534.
    • Beck LC, Sproat T, Lamb CA, Filby A, McDonald D, Masi AC, Young GR, Hambleton S, Embleton ND, Berrington JE, Stewart CJ. . Microbial Genomics 2025, 11(7).
    • Ahearn-Ford S, Kakaroukas A, Young GR, Nelson A, Abrahamse-Berkeveld M, van Elburg RM, Smith D, Berrington JE, Embleton ND, Stewart CJ. . mSystems 2025, 10(12), e00667-25.
    • Hares MF, Griffiths BE, Barningham L, Vamos EE, Gregory R, Duncan JS, Oikonomou G, Stewart CJ, Coombes JL. . Animal Microbiome 2025, 7(1), 3.
    • Berrington J, Johnson M, Garg S, Stewart C, Lamb C, Palmer J, Embleton N. . Journal of Pediatric Gastroenterology and Nutrition 2025, 80(2), 336-344.
    • Lees RD, Fyfe J, Woods L, Speight A, Stewart CJ, Pollok RCG, Lamb CA. . BMJ Open Gastroenterology 2025, 12(1), e002080.
    • Beck LC, Berrington JE, Stewart CJ. . Pediatric Research 2025, 97, 493-496.
    • Granger CL, Masi AC, Lamb CA, Embleton ND, Beck LC, Palmer JM, Stewart CJ, Berrington JE. . Pediatric Research 2025, epub ahead of print.
    • Cleminson JS, Young GR, Campbell DI, Campbell F, Gennery AR, Berrington JE, Stewart CJ. . Pediatric Research 2025, epub ahead of print.
    • Wyatt NJ, Watson H, Young GR, Doona M, Tilling N, Allerton D, Masi AC, Ahmad T, Doyle JA, Frith K, Hart A, Hildreth V, Irving PM, Jones C, Kennedy NA, Lawrence S, Lees CW, Lees R, Liddle T, Lindsay JO, Marchesi J, Parkes M, Powell N, Prescott NJ, Raine T, Satsangi J, Whelan K, Wood R, King A, Jostins-Dean L, Speight RA, McGregor N, Stewart CJ, Lamb CA. . eBiomedicine 2025, 112, 105550.
    • Salas AA, Stewart CJ, Young GR. . Pediatric Research 2026, 99, 1964-1969.
    • Oliver AJ, Huang N, Bartolome-Casado R, Li R, Koplev S, Nilsen HR, Moy M, Cakir B, Polanski K, Gudino V, Melon-Ardanaz E, Sumanaweera D, Dimitrov D, Milchsack LM, FitzPatrick MEB, Provine NM, Boccacino JM, Dann E, Predeus AV, To K, Prete M, Chapman JA, Masi AC, Stephenson E, Engelbert J, Lobentanzer S, Perera S, Richardson L, Kapuge R, Wilbrey-Clark A, Semprich CI, Ellams S, Tudor C, Joseph P, Garrido-Trigo A, Corraliza AM, Oliver TRW, Hook CE, James KR, Mahbubani KT, Saeb-Parsy K, Zilbauer M, Saez-Rodriguez J, Hoivik ML, Baekkevold ES, Stewart CJ, Berrington JE, Meyer KB, Klenerman P, Salas A, Haniffa M, Jahnsen FL, Elmentaite R, Teichmann SA. . Nature 2024, 635(8039), 699-707.
    • Masi AC, Stewart CJ. . Microbial Biotechnology 2024, 17(7), e14520.
    • Gault A, Hogarth L, Williams KC, Greystoke A, Rajan N, Speight A, Lamb CA, Bridgewood A, Brown-Schofield LJ, Rayner F, Isaacs JD, Nsengimana J, Stewart CJ, Anderson AE, Plummer R, Pratt AG. . BMC Cancer 2024, 24(1), 733.
    • Cottam C, White RT, Beck LC, Stewart CJ, Beatson SA, Lowe EC, Grinter R, Connolly JPR. . Nature Communications 2024, 15, 4462.
    • Masi AC, Beck LC, Perry JD, Granger CL, Hiorns A, Young GR, Bode L, Embleton ND, Berrington JE, Stewart CJ. . Cell Reports Medicine 2024, 5(9), 101708.
    • Cleminson JS, Thomas J, Stewart CJ, Campbell D, Gennery A, Embleton ND, Koglmeier J, Wong T, Spruce M, Berrington JE. . BMJ Open Gastroenterology 2024, 11(1), e001450.
    • Cifuentes MP, Chapman JA, Stewart CJ. . Current Research in Microbial Sciences 2024, 6, 100219.
    • Malcomson FC, Louca P, Nelson A, Willis ND, McCallum I, Xie L, Ouwehand AC, Stowell JD, Preston T, Morrison DJ, Kelly SB, Michael Bradburn D, Belshaw NJ, Johnson IT, Corfe BM, Stewart CJ, Mathers JC. . British Journal of Nutrition 2024, 132(11), 1433-1445.
    • Wyatt NJ, Watson H, Anderson CA, Kennedy NA, Raine T, Ahmad T, Allerton D, Bardgett M, Clark E, Clewes D, Martin CC, Doona M, Doyle JA, Frith K, Hancock H, Hart A, Hildreth V, Irving PM, Iqbal S, Kennedy C, King A, Lawrence S, Lees CW, Lees R, Letchford L, Liddle T, Lindsay JO, Maier RH, Mansfield JC, Marchesi JR, McGregor N, McIntyre RE, Ostermayer J, Osunnuyi T, Powell N, Prescott NJ, Satsangi J, Sharma S, Shrestha T, Speight A, Strickland M, Wason JMS, Whelan K, Wood R, Young GR, Zhang X, Parkes M, Stewart CJ, Jostins-Dean L, Lamb CA. . BMJ Open 2024, 14(4).
    • Alexander JL, Wyatt NJ, Camuzeaux SSM, Chekmeneva E, Jimenez B, Sands CJ, Fuller H, Ahmad T, Doyle JA, Hart A, Irving PM, Kennedy NA, Lees CW, Lindsay JO, McIntyre RE, Parkes M, Prescott N, Raine T, Satsangi J, Speight RA, Jostins-Dean L, Powell N, Marchesi JR, Stewart CJ, Lamb CA. . Gut 2024, 73(2), 379-383.
    • Chapman JA, Wroot E, Brown T, Beck LC, Embleton ND, Berrington JE, Stewart CJ. . BMC Microbiology 2024, 24, 533.
    • Fofanova TY, Karandikar UC, Auchtung JM, Wilson RL, Valentin AJ, Britton RA, Grande-Allen KJ, Estes MK, Hoffman K, Ramani S, Stewart CJ, Petrosino JF. . PLoS ONE 2024, 19(7), e0300666.
    • Houghton D, Shannon OM, Chater PI, Wilcox MD, Pearson J, Stanforth K, Jordan C, Avery L, Blain AP, Joel A, Jeffers R, Nolan R, Nelson A, Stewart CJ, Malcomson FC. . Gut Microbiome 2023, 4, e8.
    • Powell J, Powell S, Mather MW, Beck L, Nelson A, Palmowski P, Porter A, Coxhead J, Hedley A, Scott J, Rostron AJ, Hellyer T, Zaidi F, Davey T, Garnett JP, Agbeko R, Ward C, Stewart CJ, Taggart CC, Brodlie M, Simpson AJ. . Thorax 2023, 78(10), 1019-1027.
    • Yew WC, Young GR, Nelson A, Cheung W, Stewart CJ, Bridge SH, Granger C, Berrington JE, Embleton ND, Smith DL. . Cell Reports 2023, 42(11), 113373.
    • Hares MF, Griffiths BE, Johnson F, Nelson C, Haldenby S, Stewart CJ, Duncan JS, Oikonomou G, Coombes JL. . Animal Microbiome 2023, 5, 43.
    • Kiu R, Shaw AG, Sim K, Acuna-Gonzalez A, Price CA, Bedwell H, Dreger SA, Fowler WJ, Cornwell E, Pickard D, Belteki G, Malsom J, Phillips S, Young GR, Schofield Z, Alcon-Giner C, Berrington JE, Stewart CJ, Dougan G, Clarke P, Douce G, Robinson SD, Kroll JS, Hall LJ. . Nature Microbiology 2023, 8, 1160-1175.
    • Kimble R, Gouinguenet P, Ashor A, Stewart C, Deighton K, Matu J, Griffiths A, Malcomson FC, Joel A, Houghton D, Stevenson E, Minihane AE, Siervo M, Shannon OM, Mathers JC. . Critical Reviews in Food Science and Nutrition 2023, 63(27), 8698-8719.
    • Embleton ND, Sproat T, Uthaya S, Young GR, Garg S, Vasu V, Masi AC, Beck L, Modi N, Stewart CJ, Berrington JE. . JAMA Network Open 2023, 6(3), e231165.
    • Stewart CJ. . Science 2023, 381(6653), 38-38.
    • Young GR, Nelson A, Stewart CJ, Smith DL. . Current Opinion in Microbiology 2023, 75, 102379.
    • Stewart CJ. . Journal of Medical Microbiology 2023, 72(4), 001662.
    • Hampton J, Koo S, Dobson C, Stewart C, Neilson L, Montague K, Mitra S, Whelpton J, Addison C, Kelly P, Rushton S, Hull M, Sharp L, Rees C. . Colorectal Disease 2022, 24(10), 1216-1226.
    • Auchtung TA, Stewart CJ, Smith DP, Triplett EW, Agardh D, Hagopian WA, Ziegler AG, Rewers MJ, She JX, Toppari J, Lernmark A, Akolkar B, Krischer JP, Vehik K, Auchtung JM, Ajami NJ, Petrosino JF. . Nature Communications 2022, 13, 3151.
    • Beck LC, Masi AC, Young GR, Vatanen T, Lamb CA, Smith R, Coxhead J, Butler A, Marsland BJ, Embleton ND, Berrington JE, Stewart CJ. . Nature Microbiology 2022, 7, 1525-1535.
    • Granger CL, Lamb CA, Embleton ND, Beck LC, Masi AC, Palmer JM, Stewart CJ, Berrington JE. . Pediatric Research 2022, 92(4), 979-986.
    • Houghton D, Ng YS, Jackson MA, Stefanetti R, Hynd P, Aogáin MM, Stewart CJ, Lamb CA, Bright A, Feeney C, Newman J, Turnbull DM, McFarland R, Blain AP, Gorman GS. . Gastro Hep Advances 2022, 1(4), 666-677.
    • Young GR, Berrington JE, Cummings S, Dorling J, Ewer AK, Frau A, Lett L, Probert C, Juszczak E, Kirby J, Beck L, Renwick VL, Lamb CA, Lanyon C, McGuire W, Stewart CJ, Embleton ND. . Archives of Disease in Childhood 2022, 108(3), 272-279.
    • Lugo-Martinez J, Xu S, Levesque J, Gallagher D, Parker LA, Neu J, Stewart CJ, Berrington JE, Embleton ND, Young G, Gregory KE, Good M, Tandon A, Genetti D, Warren T, Bar-Joseph Z. . Journal of Biomedical Informatics 2022, 128, 104031.
    • Li L, Houghton D, Lietz G, Watson A, Stewart CJ, Bal W, Seal CJ. . Nutrients 2022, 14(22), 4888.
    • Al-Momani H, Perry A, Nelson A, Stewart CJ, Jones R, Krishnan A, Robertson A, Bourke S, Doe S, Cummings S, Anderson A, Forrest T, Forrest I, Griffin M, Wilcox M, Brodlie M, Pearson J, Ward C. . Scientific Reports 2022, 12(1), 11114.
    • Fairley A, Stewart C, Cassidy A, Woodside J, McEvoy C. . Journal of Alzheimer's Disease 2022, 88(3), 933-941.
    • NorthrupTF, Stotts AL, Suchting R, Matt GE, Qunitana PEJ, Khan AM, Green C, Klawans MR, Johnson M, Benowitz N, Jacob P, Hoh E, Hovell MF, Stewart CJ. . Environmental Research 2021, 197, 111180.
    • Frau A, Lett L, Slater R, Young GR, Stewart CJ, Berrington J, Hughes DM, Embleton N, Probert C. . Molecules 2021, 26(11), 3341.
    • Nelson A, Stewart CJ, Kennedy NA, Lodge JK, Tremelling M, Probert CS, Parkes M, Mansfield JC, Smith DL, Hold GL, Lees CW, Bridge SH, Lamb CA. . Journal of Crohn's & Colitis 2021, 15(5), 800-812.
    • Hares MF, Tiffney EA, Johnston LJ, Luu L, Stewart CJ, Flynn RJ, Coombes JL. . Parasite Immunology 2021, 43(2), e12765.
    • Gaukroger CH, Edwards SA, Walshaw J, Nelson A, Adams IP, Stewart CJ, Kyriazakis I. . Animal 2021, 15(3), 100135.
    • Masi AC, Embleton ND, Lamb CA, Young G, Granger CL, Najera JA, Smith DP, Hoffman KL, Petrosino JF, Bode L, Berrington JE, Stewart CJ. . Gut 2021, 70(12), 2273-2282.
    • Kakaroukas A, Abrahamse-Berkeveld M, Berrington J, McNally RJQ, Stewart CJ, Embleton ND, van-Elburg RM. . Frontiers in Nutrition 2021, 8, 561419.
    • Capper TE, Houghton D, Stewart CJ, Blain AP, McMahon N, Siervo M, West DJ, Stevenson EJ. . NFS Journal 2020, 21, 28-37.
    • Crouch LI, Liberato MV, Urbanowicz PA, Basle A, Lamb CA, Stewart CJ, Cooke K, Doona M, Needham S, Brady RR, Berrington JE, Madunic K, Wuhrer M, Chater P, Pearson JP, Glowacki R, Martens EC, Zhang F, Linhardt RJ, Spencer DIR, Bolam DN. . Nature Communications 2020, 11(1), 4017.
    • Mansbach JM, Luna PN, Shaw CA, Hasegawa K, Petrosino JF, Piedra PA, Sullivan AF, Espinola JA, Stewart CJ, Camargo CAJr. . Journal of Allergy and Clinical Immunology 2020, 145(2), P518-527.E8.
    • Gaukroger CH, Stewart CJ, Edwards SA, Walshaw J, Adams IP, Kyriazakis I. . Frontiers in Microbiology 2020, 11, 917.
    • Stewart CJ, Fatemizadeh R, Parsons P, Lamb CA, Shady DA, Petrosino JF, Hair AB. . BMC Microbiology 2019, 19.
    • Masi AC, Stewart CJ. . Early Human Development 2019, 104854.
    • Stewart CJ, Mansbach JM, Ajami NJ, Petrosino JF, Zhu Z, Liang L, Camargo CA, Hasegawa K. . The Journal of Infectious Diseases 2019, 219(12), 2005–2014.
    • Roberts SA, Brabin L, Diallo S, Gies S, Nelson A, Stewart CJ, Swinkels D, Geurts-Moespot A, Kazienga A, Ouedraogo S, D'Alessandro U, Tinto H, Brabin B. . European Journal of Clinical Nutrition 2019, 527.
    • Curtis K, Stewart CJ, Robinson M, Molfese DL, Gosnell SN, Kosten TR, Petrosino JF, DeLaGarzaII R, Salas R. . European Journal of Neuroscience 2019, 50(3), 2446-2452.
    • Stewart CJ. . Nature Microbiology 2019, 4(11), 1774-1775.
    • Watson AW, Houghton D, Avery PJ, Stewart C, Vaughan EE, Meyer PD, de Bos Kuil MJJ, Weijs PJM, Brandt K. . Food Hydrocolloids 2019, 96, 688-698.
    • Ihekweazu FD, Fofanova TY, Queliza K, NagySzakal D, Stewart CJ, Engevik MA, Hulten KG, Tatevian N, Graham DY, Versalovic J, Petrosino JF, Kellermayer R. . Gut Microbes 2019, 10(4), 504-520.
    • Vatanen T, Franzosa EA, Schwager R, Tripathi S, Arthur TD, Vehik K, Lernmark Å, Hagopian WA, Rewers MJ, She J-X, Toppari J, Ziegler A-G, Akolkar B, Krischer JP, Stewart CJ, Ajami NJ, Petrosino JF, Gevers D, Lähdesmäki H, Vlamakis H, Huttenhower C, Xavier RJ. . Nature 2018, 562, 589–594.
    • Stewart CJ, Ajami NJ, O'Brien JL, Hutchinson DS, Smith DP, Wong MC, Ross MC, Lloyd RE, Doddapaneni H, Metcalf GA, Muzny D, Gibbs RA, Vatanen T, Huttenhower C, Xavier RJ, Rewers M, Hagopian W, Toppari J, Ziegler A-G, She J-X, Akolkar B, Lernmark A, Hyoty H, Vehik K, Krischer JP, Petrosino JF. . Nature 2018, 562, 583-588.
    • Houghton D, Hardy T, Stewart C, Errington L, Day CP, Trenell MI, Avery L. . Diabetologia 2018, 61(8), 1700-1711.
    • Stewart CJ, Hasegawa K, Wong MC, Ajami NJ, Petrosino JF, Piedra PA, Espinola JA, Tierney CN, Camargo CA, Mansbach JM. . Journal of Infectious Diseases 2018, 217(7), 1160–1169.
    • Valentine G, Chu DM, Stewart CJ, Aagaard KM. . Clinics in Perinatology 2018, 45(2), 339-355.
    • Auchtung T, Fofanova T, Stewart CJ, Nash A, Wong M, Gesell J, Auchtung A, Ajami N, Petrosino J. . mSphere 2018, 3(2), e00092-18.
    • Ramani S, Stewart CJ, Laucirica DR, Ajami NJ, Robertson B, Autran CA, Shinge D, Rani S, Anandan S, Hu L, Ferreon JC, Kuruvilla KA, Petrosino JF, Venkataram Prasad BV, Bode L, Kang G, Estes MK. . Nature Communications 2018, 9, 5010.
    • Stewart CJ, Auchtung TA, Ajami NJ, Velasquez K, Smith DP, DeLaGarzaII R, Salas R, Petrosino JF. . PeerJ 2018, 6, e4693.
    • Hasegawa K, Stewart CJ, Celedón JC, Mansbach JM, Tierney C, Camargo CA. . Allergy 2018, 73(5), 1135-1140.
    • Houghton D, Stewart CJ, Stamp C, Nelson A, Ajami NJ, Petrosino JF, Wipat A, Trenell MI, Turnbull DM, Greaves LC. . The Journals of Gerontology: Series A, Biological Sciences & Medical Sciences 2018, 73(5), 571-578.
    • Nash AK, Auchtung TA, Wong MC, Smith DP, Gesell JR, Ross MC, Stewart CJ, Metcalf GA, Muzny DM, Gibbs RA, Ajami NJ, Petrosino JF. . Microbiome 2017, 5(1), 153.
    • Hasegawa K, Stewart CJ, Mansbach JM, Linnemann RW, Ajami NJ, Petrosino JF, Camargo CA. . BMC Research Notes 2017, 10(1), 325.
    • Embleton ND, Berrington JE, Dorling J, Ewer AK, Juszczak E, Kirby JA, Lamb CA, Lanyon CV, McGuire W, Probert CS, Rushton SP, Shirley MD, Stewart CJ, Cummings SP. . Frontiers in Microbiology 2017, 4, 14.
    • Stewart CJ, Embleton ND, Marrs ECL, Smith DP, Fofanova T, Nelson A, Skeath T, Perry JD, Petrosino JF, Berrington JE, Cummings SP. . Microbiome 2017, 5(1), 75.
    • Houghton D, Stewart CJ, Stamp C, Nelson A, Ajami NJ, Petrosino JF, Wipat A, Trenell MI, Turnbull DM, Greaves LC. . The Journals of Gerontology: Series A 2017, 73(5), 571-578.
    • Stewart CJ, Nelson A, Campbell MD, Walker M, Stevenson EJ, Shaw JA, Cummings SP, West DJ. . Diabetic Medicine 2017, 34(1), 127-134.
    • Brabin L, Roberts S, Gies S, Nelson A, Diallo S, Stewart CJ, Kazienga A, Birtles J, Ouedraogo S, Claeys Y, Tinto H, d'Alessandro H, Faragher B, Brabin B. . BMC Medicine 2017, 15(1), 206.
    • O'Neil DS, Stewart CJ, Chu DM, Goodspeed DM, Gonzalez-Rodriguez PJ, Shope CD, Aagaard KM. . American Journal of Obstetrics and Gynecology 2017, 217(2), 218.e1-218.e15.
    • Stewart CJ, Embleton ND, Clements E, Luna PN, Smith DP, Fofanova TY, Nelson A, Taylor G, Orr CH, Petrosino JF, Berrington JE, Cummings SP. . Frontiers in Microbiology 2017, 8, 1008.
    • Zalewski S, Stewart CJ, Embleton ND, Berrington JE. . Archives of Disease in Childhood: Education and Practice Edition 2017, 103(6), 327-330.
    • Stewart CJ, Mansbach JM, Wong MC, Ajami NJ, Petrosino JF, Camargo CA, Hasegawa K. . American Journal of Respiratory and Critical Care Medicine 2017, 196(7), 882-891.
    • Aagaard KJ, Stewart CJ, Chu D. . EMBO Reports 2016, 17(12), 1679-1684.
    • Stewart CJ, Embleton ND, Marrs ECL, Smith DP, Nelson A, Abdulkadir B, Skeath T, Petrosino JF, Perry JD, Berrington JE, Cummings SP. . Microbiome 2016, 4, 67.
    • Abdulkadir B, Nelson A, Skeath T, Marrs ECL, Perry JD, Cummings SP, Embleton ND, Berrington JE, Stewart CJ. . Early Human Development 2016, 95, 1-2.
    • Abdulkadir B, Nelson A, Skeath T, Marrs ECL, Perry JD, Cummings SP, Embleton ND, Berrington JE, Stewart CJ. . Neonatology 2016, 109(4), 239-247.
    • Al-Momani H, Perry A, Stewart CJ, Jones R, Krishnan A, Robertson AG, Bourke S, Doe S, Cummings SP, Anderson A, Forrest T, Griffin SM, Brodlie M, Pearson J, Ward C. . Scientific Reports 2016, 6, 26985.
    • Stewart CJ, Nelson A, Treumann A, Skeath T, Cummings SP, Embleton ND, Berrington JE. . Pediatric Research 2016, 79(3), 425-431.
    • Houghton D, Stewart C, Day C, Trenell M. . International Journal of Molecular Sciences 2016, 17(4), 447.
    • Skeath T, Stewart CJ, Waugh S, Embleton ND, Cummings SP, Berrington JE. . Acta Paediatrica 2016, 105(1), 50-52.
    • Stewart CJ, Skeath T, Nelson A, Fernstad SJ, Marrs ECL, Perry JD, Cummings SP, Berrington JE, Embleton ND. . Scientific Reports 2015, 5, 17141.
    • Stewart CJ, Cummings SP. . Trends in Microbiology 2015, 23(6), 332-333.
    • Orr CH, Stewart CJ, Leifert C, Cooper JM, Cummings SP. . Journal of Applied Microbiology 2015, 119(1), 208-214.
    • Berrington JE, Hearn RI, Hall C, Stewart CJ, Cummings SP, Embleton ND. . Fetal & Pediatric Pathology 2014, 33(1), 16-22.
    • Purcell P, Jary H, Perry A, Perry JD, Stewart CJ, Nelson A, Lanyon C, Smith DL, Cummings SP, De Soyza A. . BMC Microbiology 2014, 14, 130.
    • Embleton ND, Berrington JE, McGuire W, Stewart CJ, Cummings SP. . Seminars in Fetal and Neonatal Medicine 2013, 18(3), 143-149.
    • Berrington JE, Stewart CJ, Embleton ND, Cummings SP. . Archives of Disease in Childhood - Fetal and Neonatal Edition 2013, 98(4), F286-F290.
    • Stewart CJ, Marrs ECL, Nelson A, Lanyon C, Perry JD, Embleton ND, Cummings SP, Berrington JE. . PLoS ONE 2013, 8(8), e73465.
    • Stewart CJ, Nelson A, Scribbins D, Marrs ECL, Lanyon C, Perry JD, Embleton ND, Cummings SP, Berrington JE. . Archives of Disease in Childhood - Fetal and Neonatal Edition 2013, 98(4), F298-F303.
    • Stewart CJ, Marrs ECL, Magorrian S, Nelson A, Lanyon C, Perry JD, Embleton ND, Cummings SP, Berrington JE. . Acta Paediatrica 2012, 101(11), 1121-1127.

  • Book Chapters

    • Stewart CJ. . In: Nicholas D. Embleton, Ferdinand Haschke, Lars Bode, ed. Strategies in Neonatal Care to Promote Optimized Growth and Development: Focus on Low Birth Weight Infants. Basel: Karger, 2022, pp.141-148.
    • Nelson A, Stewart CJ. . In: Methods in Molecular Biology. Humana Press Inc, 2020, pp.165-184.
    • Stewart CJ, Cummings SP. . In: Crystal D Karakochuk, Kyly C. Whitfield, Tim J Green, Klaus Kraemer, ed. The Biology Behind the First 1,000 Days of Life. USA: CRC Press/Taylor & Francis Group, 2017.
    • Stewart CJ. . In: Nelson K, ed. Encyclopedia of Metagenomics. Berlin Heidelberg: SpringerReference, 2013.

  • Conference Proceedings (inc. Abstract)

    • Johansson Fernstad S, Macquisten A, Berrington J, Embleton N, Stewart C. . In: EuroVis Workshop on Visual Analytics (EuroVA). 2020, Norrköping, Sweden: The Eurographics Association.

  • Editorial

    • Collado MC, Stewart CJ. . Current Opinion in Microbiology 2024, 78, 102438.

  • Letters

    • Cleminson J, Kerbiriou C, McKirdy S, Beck L, Campbell DI, Gennery AR, Berrington JE, Gerasimidis K, Stewart CJ. . Metabolomics 2025, 21(5), 139.
    • Mitra S, Stewart CJ, Nelson A, Hampton JS, Masi AC, Manning S, Sharp L, Hull MA, Rees CJ. . Gut 2025, 74(1), e8.
    • Masi AC, Fofanova TY, Lamb CA, Auchtung JM, Britton RA, Estes MK, Ramani S, Cockell S, Coxhead J, Embleton ND, Berrington JE, Petrosino JF, Stewart CJ. . Gut 2022, 71(10), 2141-2143.
    • Masi AC, Koo S, Lamb CA, Hull MA, Sharp L, Nelson A, Hampton JS, Rees CJ, Stewart CJ. . Gut 2021, 70(2), 429-431.
    • Masi AC, Oppong YEA, Haugk B, Lamb CA, Sharp L, Shaw JM, Stewart CJ, Oppong KW. . Gut 2021, 70(5), 999-1001.
    • Stewart CJ, Mansbach JM, Piedra PA, Toivonen L, Camargo CA, Hasegawa K. . Pediatric Allergy and Immunology 2019, 30(8), 848-851.
    • Hasegawa K, Stewart CJ, Celedón JC, Mansbach JM, Tierney C, Camargo CA. . Pediatric Allergy and Immunology 2018, 29(4), 335-462.
    • Lane JP, Stewart CJ, Cummings SP, Gennery AR. . Journal of Allergy and Clinical Immunology 2016, 138(2), 622-625.
    • Lane JP, Stewart CJ, Cummings SP, Gennery AR. . Journal of Allergy and Clinical Immunology 2015, 135(6), 1654-1656.

  • Notes

    • Wroot E, Chapman JA, Young GR, Berrington JE, Stewart CJ. . Nature Microbiology 2025, 10, 1263-1266.
    • Stewart C, Mukherjee A, Sudhir A. . The Biologist 2025, 72(4), 22-25.
    • Stewart CJ. . Nature Microbiology 2021, 6, 1335-1336.

  • Reviews

    • Manning S, Hackney E, Dunneram Y, Hull MA, Mitra S, Stewart CJ, Louca P, Meader N, Sharp L, Rees C. . Alimentary Pharmacology and Therapeutics 2025, 62(6), 568-584.
    • Neu J, Stewart CJ. . Pediatric Research 2025, 98, 1223-1231.
    • Greenwood M, Murciano-Martinez P, Berrington J, Flitsch SL, Austin S, Stewart C. . Microbial Cell 2024, 11, 221-234.
    • Chapman JA, Stewart CJ. . Gut Microbes 2023, 15(1), 2183687.
    • Williams KC, Gault A, Anderson AE, Stewart CJ, Lamb CA, Speight RA, Rajan N, Plummer R, Pratt AG. . Frontiers in Immunology 2023, 14, 1122430.
    • Masi AC, Stewart CJ. . iScience 2022, 25(1), 103542.
    • Gerasimidis K, Gkikas G, Stewart CJ, Neelis E, V Svolos. . Archives of Disease in Childhood 2022, 107(9), 784-789.
    • Renwick VL, Stewart CJ. . Acta Paediatrica 2022, 111(1), 45-53.
    • Ahearn-Ford S, Berrington JE, Stewart CJ. . Experimental Physiology 2022, 107(5), 415-421.
    • Beck LC, Granger CL, Masi AC, Stewart CJ. . Expert Review of Proteomics 2021, 18(4), 247-259.
    • Wyatt N, Speight RA, Stewart CJ, Kirby JA, Lamb CA. . BioDrugs 2021, 35, 473-503.
    • Granger CL, Embleton ND, Palmer JM, Lamb CA, Berrington JE, Stewart CJ. . Acta Paediatrica 2021, 110(2), 450-457.
    • Gault A, Anderson A, Plummer R, Stewart C, Pratt AG, Rajan N. . British Journal of Dermatology 2021, 185(2), 263-271.
    • Berrington JE, Stewart CJ, Cummings SP, Embleton ND. . Current Opinion in Infectious Diseases 2014, 27(3), 236-243.